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species

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Species

Here we must choose the species of our experiment. You can choose among:

  • Human (Homo sapiens)
  • Mouse (Mus musculus)
  • Rat (Rattus norvegicus)

When a VCF file has been selected, only Human species can be selected. Also, we need to specify some further parameters:

  • Reference genome: Select either reference genome GRCh37 or GRCh38
  • Inheritance pattern: Select the kind of inheritance pattern, either recessive or dominant.
  • Compound hetero: Select if heterozygote compounds must be considered.
  • SIFT, PolyPhen, PhastCons: Select which tools must be used on order to infer the impact of the mutations in the expression profile. At least one must be selected.
species.1450458177.txt.gz · Last modified: 2017/05/24 14:33 (external edit)