Differences

This shows you the differences between two versions of the page.

--- path_values [2016/12/22 23:53] – ccubuk
+++ path_values [2017/05/24 14:33] (current) – external edit 127.0.0.1
@@ Line 8: / Line 8: @@
   * **Module significance**: Ordered table of module significance. More significant module are displayed in the upper part of the table. For each circuit, the following information is shown:
     * **ModuleID**: This code is identifying the KEGG module ID and the metabolite which produced (last node of module) by the module (e.g M00036_C00164). If module is a loop like TCA cycle, a random node of the module is used as last node of module (M00009_R00342,R00361).
-    * **UP/DOWN**: Up when the module is up-regulated in the disease case, DOWN otherwise.
+    * **ModuleDescription**: Description of the module.
+    * **Pathway**: Name of the pathway which contains module.
     * **statistic**: Statistic of the Wilcoxon test performed between conditions.
     * **p.value**: P-value of the statistic test.
-    * **FDRp.value**: Adjusted p-value of the statistic test using the FDR method.
+    * **adj.pvalue**: Adjusted p-value of the statistic test using the FDR method.
+    * **Status**: Up when the module is up-regulated in the disease case, DOWN otherwise.
+    * **StartMetaboliteID**: First node(s) of the module. Node(s)with zero indegree. KEGG metabolite ID.
+    * **StartMetaboliteName**: First node(s) of the module. Node(s)with zero indegree. KEGG metabolite name.
+    * **StartMetaboliteID**: First node(s) of the module. Node(s)with zero indegree. KEGG metabolite ID.
+    * **StartMetaboliteName**: First node(s) of the module. Node(s)with zero indegree. KEGG metabolite name.
+    * **EndMetaboliteID**: Last node of the module. Node with zero outdegree. KEGG metabolite ID.
+    * **EndMetaboliteName**: Last node of the module. Node with zero outdegree. KEGG metabolite name.
+    * **KEGGlink**: Link of the module on http://www.genome.jp/kegg/module.html