This panel includes further parameters necessary to run a job.

Decompose paths: Check to consider subpathways with a unique input and a unique output in the analysis. When not selected the analysis is performed using subpathways with multiple inputs but a unique output (effector subpathways).

Color nodes by differential expression: Check to perform a gene differential expression and color each node depending on the adjusted p-value of the test.

Filter subpaths: Check to obtain the subpathways that best differentiate your phenotype. This option is only available from Prediction tool.