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--- differential_signaling_exercises [2016/02/25 11:49] – mhidalgo
+++ differential_signaling_exercises [2017/05/24 14:33] (current) – external edit 127.0.0.1
@@ Line 33: / Line 33: @@
 Run the Differential signaling tool with these files, selecting the options of both functional analysis //Gene ontology// and //Uniprot keywords//.
-Try to identify representative functions of this experiment (related to the disease). Are there significative functions? Are they related with the disease?
+**2.1.-** Try to identify representative functions of this experiment (related to the disease). Are there significative functions? Are they related with the disease?
+**2.2.-** Look at the Heatmaps provided by the tool for the different analyses. Do you think that a predictor could be trained from these data? With which matrix do you think that it would work better?
@@ Line 45: / Line 47: @@
   * Experimental design: {{:kirc_demo_ED_class.txt|}}
-**3.1.-** Run the Differential signaling tool with these files, selecting also the functional analyses. You can select the option //Color nodes by differentail expression// if desired. Look at the results. If you have done Exercises 1 or 2, can you find any difference in the results of this dataset?
+**3.1.-** Run the Differential signaling tool with these files, selecting also the functional analyses. You can select the option //Color nodes by differentail expression// if desired. Find representative paths and functions of this disease.
-**3.2.-** Look at the Heatmaps provided by the tool for the different analyses. Do you think that a predictor could be trained from these data? With which matrix do you think that it would work better?
+**3.2.-** Look at the results. If you have done Exercises 1 or 2, can you find any difference in the results of this dataset?