Differences

This shows you the differences between two versions of the page.

--- differential_signaling [2016/12/22 22:26] – ccubuk
+++ differential_signaling [2017/05/24 14:33] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
-====== Differential signaling ======
+===== Module Activity =====
 Metabolizer allows us to compute activity value for each module and each one of our data samples.
 Therefore, it allows us to compare the module activity value between different conditions.
-The tool can be accessed from the main menu bar, by clicking on the //Differential signaling// button, see [[workflow|Workflow]] for further information.
+The tool can be accessed from the main menu bar, by clicking on the //Activity// button, see [[workflow|Workflow]] for further information.
  === INPUT ===
@@ Line 18: / Line 18: @@
 === OUTPUT ===
-The results page of the Differential signaling tool includes different output results. You can download any table or image showed in the results page by clicking on the name right above it. You can also download calculated module activity values and statistical results by clicking on //**Module values**// and //**Path significance**// respectively.
+The results page of the module activity tool includes different output results. You can download any table or image showed in the results page by clicking on the name right above it. You can also download calculated module activity values and statistical results by clicking on //**Module values**// and //**Path significance**// respectively. Using module activity values clustering of the samples are represented with heatmap and Principal component analysis (PCA) plots
 The results are divided in different panels:
   * [[Input Parameters|Input Parameters]]
-  * [[Path values|Circuit values]]
+  * [[Path values|Module Values]]
-  * [[Function based analysis|Function based analysis]]
   * [[Pathway viewer|Pathway viewer]]